φ-evo documentation
¶
Install φ-evo
install Anaconda
install the package
Install gcc on windows
Install gcc on mac osx
Install pygraphviz
run_evolution.py script
Analyse notebook
Test your installation
Create a new project
Presentation
An algorithm overview
Network components
Population & Evolution
Modelization & Integration
Create a new project
Build a network manually
Run a simulation
Restart an evolution
Pareto evolution
Simulation parameters
Kinetic parameters (
dictionary_ranges
)
Mutation parameters (
dictionary_mutation
)
General simulation parameters (
prmt
)
Restart parameters (
prmt["restart"]
)
Results and Analysis Tools
Organization of the results
Analysis Tools
Notebook
Examples
Examples of projects
Examples of seeds
Hox pareto
References
A simple example: the lactose operon
Description of the biological problem
Implementation in the algorithm
How to read and interpret results
Create a new interaction
Imports
Define a new type of species
Define the
Methyl
class
Handling the mutation
Bind the code to φ-evo
Known Bugs
Disabling scrolling bar in Analyse Run.ipynb
phievo package
Networks module
PlotGraph
Populations
Analysis tools
Indices and tables
¶
Index
Module Index
Search Page
Table Of Contents
φ-evo documentation
Indices and tables
Related Topics
Documentation overview
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