φ-evo documentation

• Install φ-evo
  • install Anaconda
  • install the package
  • Install gcc on windows
  • Install gcc on mac osx
  • Install pygraphviz
  • run_evolution.py script
  • Analyse notebook
  • Test your installation
  • Create a new project
• Presentation
  • An algorithm overview
  • Network components
  • Population & Evolution
  • Modelization & Integration
• Create a new project
  • Build a network manually
  • Run a simulation
  • Restart an evolution
  • Pareto evolution
• Simulation parameters
  • Kinetic parameters (dictionary_ranges)
  • Mutation parameters (dictionary_mutation)
  • General simulation parameters (prmt)
  • Restart parameters (prmt["restart"])
• Results and Analysis Tools
  • Organization of the results
  • Analysis Tools
  • Notebook
• Examples
  • Examples of projects
  • Examples of seeds
  • Hox pareto
  • References
• A simple example: the lactose operon
  • Description of the biological problem
  • Implementation in the algorithm
  • How to read and interpret results
• Create a new interaction
  • Imports
  • Define a new type of species
  • Define the Methyl class
  • Handling the mutation
  • Bind the code to φ-evo
• Known Bugs
  • Disabling scrolling bar in Analyse Run.ipynb
• phievo package
  • Networks module
  • PlotGraph
  • Populations
  • Analysis tools

Indices and tables

• Index
• Module Index
• Search Page